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Veranstaltungen

Workshop on Computational Models in Biology and Medicine 2024

the working groups “Mathematical Models in Medicine and Biology” and “Statistical Methods in Bioinformatics” of the GMDS & IBS-DR are happy to announce the

Workshop on Computational Models in Biology and Medicine 2024
taking place on June 6th and 7th in Dresden, Germany


Confirmed keynote speakers:

* Anne-Christin Hauschild (University of Göttingen, Göttingen, Germany)
* Kathrin Thedieck (University of Innsbruck, Innsbruck, Austria)
* Carsten Marr (Helmholtz Zentrum München, München, Germany)

Abstracts for talks and posters can be submitted until April 14th, 2024.

For more information please visit the workshop homepage: https://www.biometrische-gesellschaft.de/arbeitsgruppen/statistische-methoden-i-d-bioinformatik/workshop2024.html

RNA-Seq Data Analysis Workshop (11.03.2024 - 14.03.2024)

Advance your research. Understand RNA-Seq analyses challenges and solve them yourself.

In a nutshell

  • Learn the essential computing skills for NGS bioinformatics
  • Understand NGS analysis algorithms (e.g. read alignment) and data formats
  • Use bioinformatics tools for handling RNA-Seq data
  • Create diagnostic graphics and statistics
  • Compare different approaches for differential expression analysis

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. You will be trained on understanding NGS data formats and handling potential problems/errors therein. In the course we will use a real-life RNA-seq dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.

 


Links: https://www.ecseq.com/workshops/workshop_2024-02-RNA-Seq-data-analysis

 

Online Course - A Practical Introduction to NGS Data Analysis (28.02.2024 - 01.03.2024)

Advance your research. Understand NGS and analyze sequence data yourself.

In a nutshell

  • Learn the essential computing skills for NGS bioinformatics
  • Understand NGS technology, algorithms and data formats
  • Use bioinformatics tools for handling sequencing data
  • Perform first downstream analyses for studying genetic variation

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. The participants will be trained on understanding their own NGS data, finding potential problems/errors therein and finally perform their first downstream analysis (variant calling). In the course we will use a real-life NGS dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this fast evolving research topic.

The online course will make use of a web conferencing system. Hands-on NGS analysis will be performed in an interactive browser-based data analysis platform. Before the course, you will get a printed manuscript.

 
 


Links: https://www.ecseq.com/workshops/workshop_2024-01-A-Practical-Introduction-to-NGS-Data-Analysis-Online-Course

 

Lipidomics Forum 2024 [1- 3 September 2024 ]

Die Konferenz wird sich auf mikrobielle Lipide und die Rolle von Lipiden bei Infektionskrankheiten konzentrieren. Wie in den Vorjahren werden wir Themen der allgemeinen Lipidomik und bioinformatische Herausforderungen für die lipidzentrierte Forschung diskutieren. In den vergangenen Jahren hatten wir lebhafte wissenschaftliche Diskussionen geführt und konnten interdisziplinäre Kooperationen fördern.

Links: https://lipidomics-forum.fz-borstel.de/

Next-Generation Sequencing Data Analysis: A Practical Introduction in Munich

Advance your research. Understand NGS and analyze sequenced data yourself.

In a nutshell

  • Learn the essential computing skills for NGS bioinformatics
  • Understand NGS technology, algorithms and data formats
  • Use bioinformatics tools for handling sequencing data
  • Perform first downstream analyses for studying genetic variation

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. The participants will be trained on understanding their own NGS data, finding potential problems/errors therein and finally perform their first downstream analysis (variant calling). In the course we will use a real-life NGS dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.

 
 


Bioinformatics Pipeline Development with Nextflow

Streamline your research through the development of reproducible analysis pipelines

In a nutshell

  • Learn the fundamental best-practices of bioinformatic pipeline development
  • Understand how workflow management systems can accelerate your research
  • Use state-of-the-art, open source software to make complex analyses routine
  • Perform your own custom analysis pipelines using Nextflow!

The purpose of the workshop is to introduce the concepts of bioinformatic pipeline development through the context of the open source Workflow Management System (WMS) Nextflow. The participants will be trained in the scripting, configuration and execution of example analysis pipelines based on current industry best-practices, and learn how to share them with other users. Finally, the participants will apply everything they have learned by implementing their own analysis pipelines from the ground up.

By the end of the workshop all attendees will be enabled to build their own scalable, reproducible bioinformatic pipelines which can be run locally, on high-performance computing clusters or even in the cloud. The course layout has been adapted to the needs of beginners in the field of computational biology and allows scientists with little or no background in software development to get a first hands-on experience in this new and fast-evolving area of expertise. This instructor-led live online workshop has been newly designed for an engaging, interactive online learning experience.

 


Links: https://www.ecseq.com/workshops/workshop_2023-08-Bioinformatics-Pipeline-Development-with-Nextflow-Online-Course

Online Course - A Practical Introduction to NGS Data Analysis

Advance your research. Understand NGS and analyze sequenced data yourself.

  • Learn the essential computing skills for NGS bioinformatics
  • Understand NGS technology, algorithms and data formats
  • Use bioinformatics tools for handling sequencing data
  • Perform first downstream analyses for studying genetic variation

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. The participants will be trained on understanding their own NGS data, finding potential problems/errors therein and finally perform their first downstream analysis (variant calling). In the course we will use a real-life NGS dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this fast evolving research topic.

The online course will make use of a web conferencing system. Hands-on NGS analysis will be performed in an interactive browser-based data analysis platform. Before the course, you will get a printed manuscript.


Links: https://www.ecseq.com/workshops/workshop_2023-06-A-Practical-Introduction-to-NGS-Data-Analysis-Online-Course

 

7th Berlin Summer School 2023 in NGS Data Analysis [September 4-8, 2023]


In a Nutshell:

- Learn the essential computing skills for NGS bioinformatics
- Understand NGS analysis algorithms (e.g. read alignment) and data formats
- Use bioinformatics tools for handling NGS data
- Perform first downstream analyses for studying genetic variation
- Compare different approaches for differential expression analysis

Scope and Topics:

The purpose of this intense one week summer course is to get a deep understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. You will be trained on understanding NGS data formats and handling potential problems/errors therein. In the summer school we will use a real-life RNA-seq dataset from the current market leader illumina.

All students will be enabled to perform important first tasks of NGS data analysis themselves. The layout of the summer school has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.

In the evenings there will be social events, like a conference dinner, or a guided city tour through Berlin. These are always great networking possibilities.

 

SBMI 2023

The systems biology of microbial infection aims to understand the interaction between hosts and pathogens by the integrative combination of experiment and theory. The focus of this symposium is on the interaction between the immune systems of humans or animals and bacterial or fungal pathogens. We welcome contributions that, for example, focus on
 
- unraveling pathogenicity mechanisms by a systems biology approach,
 
- host-microbe and microbe-microbe interactions,
 
- reconstructing cellular networks based on time series data,
 
- analysing spatio-temporal aspects of infection processes,
 
- identifying diagnostic biomarkers and potential drug targets,
 
- exploring strategies for personalized therapy.
 
The International Symposium on Systems Biology of Microbial Infection is taking place biennially since the year 2011 at the HKI-Center for Systems Biology of Infection in Jena, Germany.

RNA-Seq Data Analysis Workshop [27 - 30 March 2023]

In a Nutshell:
- Learn the essential computing skills for NGS bioinformatics
- Understand NGS analysis algorithms (e.g. read alignment) and data formats
- Use bioinformatics tools for handling RNA-Seq data
- Create diagnostic graphics and statistics
- Compare different approaches for differential expression analysis

Scope and Topics:

The purpose of this workshop is to get a deeper understanding in Next-Generation Sequencing (NGS) with a special focus on bioinformatics issues. Advantages and disadvantages of current sequencing technologies and their implications on data analysis will be discovered. You will be trained on understanding NGS data formats and handling potential problems/errors therein. In the course we will use a real-life RNA-seq dataset from the current market leader illumina.

All workshop attendees will be enabled to perform important first tasks of NGS data analysis themselves. The course layout has been adapted to the needs of beginners in the field of NGS bioinformatics and allows scientists with no or little background in computer science to get a first hands-on experience in this new and fast evolving research topic.

Website: https://www.ecseq.com/workshops/workshop_2023-02-RNA-Seq-data-analysis

 

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